Category: Matlab

Replicating structures with live cells have the potential to create environments to study processes and cell development that could become very beneficial to scientists and one of Earth’s largest ecosystems, coral reefs. These structures are complex and interesting for researchers, most reef-building corals have a mutualistic relationship with the algae that live in their tissues. The coral provides the algae with a protected environment and compounds they need for photosynthesis and in return, the algae produce oxygen and supply the coral with glucose, glycerol, and amino acids, which are the products of photosynthesis. The coral uses these products to make proteins, fats, and carbohydrates, and produce calcium carbonate.

This intricate relationship between coral and algae, that began 160 million years ago, can enlighten researchers that seek to provide a source of bioenergy and bioproduct generation. Earlier this month, a group of researchers from the University of Cambridge and the University of California San Diego has developed bionic 3D printed corals as a new tool for coral inspired biomaterials that can find use in algal biotechnology, coral reef conservation and in coral-algal symbiosis research.

The coral-inspired photosynthetic biomaterial structures were fabricated using a rapid 3D bioprinting technique capable of mimicking functional and structural traits of the coral-algal symbiosis and their results were reported in the journal Nature Communications, opening a new door to bioinspired materials and their applications for coral conservation.

The first author of the paper and a Marie Curie Fellow from Cambridge’s Department of Chemistry, Daniel Wangpraseurt, indicated that “corals are highly efficient at collecting and using light, in our lab, we’re looking for methods to copy and mimic these strategies from nature for commercial applications.”

Wangpraseurt along with his colleagues have found a way to 3D print coral structures and use them as incubators for algae growth. They claim to have tested various types of microalgae and found that growth rates were one hundred times higher than in standard liquid growth mediums.

To create the intricate structures of natural corals, the researchers have developed a bioprinting platform capable of reproducing detailed structures that mimic the complex designs and functions of living tissues, like the photosynthetic matter mimicking coral tissue and skeleton source geometries. This method can print structures with micrometer-scale resolution in just minutes.

To scan living corals and use the models for their 3D printed designs, the team used an imaging technique that uses low-coherence light to capture micrometer-resolution called an optical coherence tomography (OCT), that is usually used for medical imaging and industrial nondestructive testing. The OCT data were imported into MATLAB and converted so that the images could be sliced into 2D image sequences for bioprinting.

The bioink for the hybrid living bionic coral constructs capable of cultivating high algal cell densities was made up of final concentrations of a green microalga; a combination of polyethylene glycol diacrylate (PEGDA) with gelatin methacrylate (GelMA) to make a mechanically robust and tunable hydrogel; the photoinitiator lithium phenyl-trimethyl-benzoyl phosphinate (LAP); a food dye; cellulose-derived nanocrystals (CNC), and artificial seawater.

“We developed an artificial coral tissue and skeleton with a combination of polymer gels and hydrogels doped with cellulose nanomaterials to mimic the optical properties of living corals,” stated co-senior author Silvia Vignolini, also from Cambridge’s Department of Chemistry. “Cellulose is an abundant biopolymer; it is excellent at scattering light and we used it to optimise delivery of light into photosynthetic algae.”

The final bionic coral was designed in CAD software and was then sliced into hundreds of digital patterns with a custom-written MATLAB program. The digital patterns were uploaded to a digital micromirror device (DMD) in sequential order and used to selectively expose the prepolymer solution for continuous printing.

The custom-made 3D bioprinter uses light to print coral microscale structures in seconds. So that the printed coral copies natural coral structures and light-harvesting properties, create an artificial host-microenvironment for the living microalgae.

Chlorophyll fluorescence of bionic tentacles (Credit: Daniel Wangpraseurt)

Cambridge University suggested that the coral-inspired structures were highly efficient at redistributing light, just like natural corals, since only biocompatible materials were used to fabricate the 3D printed bionic corals.

This is critical for replicating structures with live cells, said co-senior author Shaochen Chen, also a professor from UC San Diego. “Most of these cells will die if we were to use traditional extrusion-based or inkjet processes because these methods take hours. It would be like keeping a fish out of the water; the cells that we work with won’t survive if kept too long out of their culture media. Our process is high throughput and offers really fast printing speeds, so it’s compatible with human cells, animal cells, and even algae cells in this case,” he went on.

The technique allows replication of any coral architecture, providing a variety of design solutions for augmenting light propagation. The team of researchers claims that their work “defines a class of bionic materials that is capable of interacting with living organisms and can be exploited for applied coral reef research and photobioreactor design.”